Research

P1 Publications

  • Systematic Biology

    Phylo2Vec: A Vector Representation for Binary Trees

    Matthew J. Penn, Neil Scheidwasser, Mark P. Khurana, David A. Duchêne, Christl A. Donnelly, Samir Bhatt

  • CHI '25: Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems

    A Concept at Work: A Review of Motivations, Operationalizations, and Conclusions in VR Research about Presence

    Cleo Xiao, Difeng Yu, Kasper Hornbæk, Joanna Bergström

  • CHI '25: Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems

    Tendon Vibration for Creating Movement Illusions in Virtual Reality

    Mantas Cibulskis, Difeng Yu, Erik S. Mortensen, Waseem Hassan, Mark S. Christensen, Joanna Bergström

  • Nature Scientific Reports

    Ultrasound can deliver chemical stimulants to the skin and modulate their perception

    Tor-Salve Dalsgaard, Arpit Bhatia, Lei Gao, Ryuji Hirayama, Sriram Subramanian, Joanna Bergström, Kasper Hornbæk

  • CHI '25: Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems

    Deriving Selection Techniques for GUIs based on the Multiple Process Model

    Difeng Yu, James Roberts, Kasper Hornbæk, Joanna Bergström

  • CHIIR '25: Proceedings of the 2025 ACM SIGIR Conference on Human Information Interaction and Retrieval

    From Queries to Candidates: Exploring Search and Source Interaction Behavior of Recruiters

    Toine Bogers, Mesut Kaya, Maria Gäde

  • Bulletin of Mathematical Biology

    Bayesian Inference of Phylogenetic Distances: Revisiting the Eigenvalue Approach

    Matthew J. Penn, Neil Scheidwasser, Christl A. Donnelly, David A. Duchêne, Samir Bhatt

  • International Journal of Computer Vision

    Exploring Bidirectional Bounds for Minimax-Training of Energy-Based Models

    Cong Geng, Jia Wang, Li Chen, Zhiyong Gao, Jes Frellsen, Søren Hauberg

  • CHI '25: Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems

    CreepyCoCreator? Investigating AI Representation Modes for 3D Object Co-Creation in Virtual Reality

    Julian Rasch, Julia Töws, Teresa Hirzle, Florian Müller, Martin Schmitz

  • ICLR 2025

    SweetBERT: exploring BERT-based models for IUPAC glycan nomenclature modeling

    Irene Rubia-Rodríguez, Henrik Nielsen, Garry P. Gippert, Kristian Barrett, Bernard Henrissat, Ole Winther

  • Current Opinion in Structural Biology

    Foundation models of protein sequences: A brief overview

    Andreas Bjerregaard, Peter M. Groth, Søren Hauberg, Anders Krogh, Wouter Boomsma

  • ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

    How Redundant Is the Transformer Stack in Speech Representation Models?

    Teresa Dorszewski, Albert K. Jacobsen, Lenka Tětková, Lars K. Hansen

  • Pattern Recognition. ICPR 2024 International Workshops and Challenges (ICPR 2024)

    Verifying Machine Unlearning with Explainable AI

    Àlex P. Vidal, Anders S. Johansen, Mohammad N. S. Jahromi, Sergio Escalera, Kamal Nasrollahi, Thomas B. Moeslund

  • IEEE Transactions on Pattern Analysis and Machine Intelligence

    The Conditional Cauchy-Schwarz Divergence with Applications to Time-Series Data and Sequential Decision Making

    Shujian Yu, Hongming Li, Sigurd Løkse, Robert Jenssen, José C. Príncipe

  • Association for Computational Linguistics

    SynDARin: Synthesising Datasets for Automated Reasoning in Low-Resource Languages

    Gayane Ghazaryan, Erik Arakelyan, Pasquale Minervini, Isabelle Augenstein

  • Proceedings of the AAAI Conference on Artificial Intelligence

    REPEAT: Improving Uncertainty Estimation in Representation Learning Explainability

    Kristoffer K. Wickstrøm, Thea Brüsch, Michael C. Kampffmeyer, Robert Jenssen

  • Proceedings of the 6th Northern Lights Deep Learning Conference (NLDL)

    PePR: Performance Per Resource Unit as a Metric to Promote Small-scale Deep Learning

    Raghavendra Selvan, Bob Pepin, Christian Igel, Gabrielle Samuel, Erik B. Dam

  • Proceedings of the AAAI Conference on Artificial Intelligence

    InteDisUX: intepretation-guided discriminative user-centric explanation for time series

    Hung V. Tran, Zichi Zhang, Tuan D. Pham, Ngoc P. Doan, Anh-Tuan Hoang, Peixin Li, Hans Vandierendonck, Ira Assent, Thai S. Mai

  • Proceedings of the 6th Northern Lights Deep Learning Conference (NLDL)

    FreqRISE: Explaining time series using frequency masking

    Thea Brüsch, Kristoffer K. Wickstrøm, Mikkel N. Schmidt, Tommy S. Alstrøm, Robert Jenssen

  • Association for Computational Linguistics

    Evaluating Input Feature Explanations through a Unified Diagnostic Evaluation Framework

    Jingyi Sun, Pepa Atanasova, Isabelle Augenstein

  • Pattern Recognition (DAGM GCPR 2024)

    Bounding Boxes and Probabilistic Graphical Models

    Mia Siemon, Thomas B. Moeslund, Barry Norton, Kamal Nasrollahi

  • Proceedings SPIE

    Assessing the Efficacy of Classical and Deep Neuroimaging Biomarkers in Early Alzheimer’s Disease Diagnosis

    Milla E. Nielsen, Mads Nielsen, Mostafa M. Ghazi

  • Transactions on Machine Learning Research (TMLR)

    Prior and Posterior Networks: A Survey on Evidential Deep Learning Methods For Uncertainty Estimation

    Dennis T. Ulmer, Christian Hardmeier, Jes Frellsen

  • MICCAI Workshop on Advancing Data Solutions 2024

    AMAES: Augmented Masked Autoencoder Pretraining on Public Brain MRI Data for 3D-Native Segmentation

    Asbjørn Munk, Jakob Ambsdorf, Sebastian Llambias, Mads Nielsen

  • ICLR 2024

    An improved analysis of per-sample and per-update clipping in federated learning

    Bo Li, Xiaowen Jiang, Mikkel N. Schmidt, Tommy S. Alstrøm, Sebastian U. Stich